Issue
I am trying to run this bash program in a Centos7 machine. I have tried many different ways but all the time I get this error:
line 31: syntax error near unexpected token `done' line 31: `done'
Line 31 belongs to the first done
.
I did cat -v mybash.bash
to check for weird tokens and there are none.
My script is as follows:
for mainFolder in *
do
if [ -d "${mainFolder}" ]
then
cd "${mainFolder}" || exit
echo "Entering in directory ${mainFolder}"
cp ../mypy.py .
chmod +x mypy.py
./mypy.py
echo "Executing mypy.py"
sleep 1
for subFolder in *
do
if [ -d "${subFolder}" ]
then
cd "${subFolder}" || exit
echo "Entering in directory $subFolder in $mainFolder"
echo "Submitting slurm file in current directory"
sbatch *.slurm
sleep 1
fi
cd ..
done
fi
cd ..
done
Please help me notice what I am doing wrong.
Solution
My guess is that the slurm submission script is not there. The following checks that one and no more than one script is found.
I also moved the cd ..
to happen only after a cd
.
for mainFolder in *
do
if [ -d "${mainFolder}" ]
then
echo "Entering in directory ${mainFolder}"
cd "${mainFolder}" || exit
cp ../mypy.py .
chmod +x mypy.py
echo "Executing mypy.py"
./mypy.py
sleep 1
for subFolder in *
do
if [ -d "${subFolder}" ]
then
cd "${subFolder}" || exit
echo "Entering in directory $subFolder in $mainFolder"
scripts=$(ls *.slurm)
nScripts=$(echo $scripts | wc -w)
if [ $nScripts == 1 ]
then
echo "Submitting $scripts"
sbatch $scripts
elif [ $nScripts == 0 ]
then
echo "Error: No script found"
else
echo "Error: $nScripts scripts found (${scripts})"
fi
sleep 1
cd ..
fi
done
cd ..
fi
done
Answered By - Colas Answer Checked By - Senaida (WPSolving Volunteer)