Issue
I want to install the rugarch library on a system running Red Hat 7.3 and R version 3.3.1. Unfortunately, I do not have admin rights on the machine.
The installation of rugarch fails due to a compilation errror of multicool.
Running install.packages('multicool') terminates with the error mesage:
compilation aborted for multicool.cpp (code 2)
make: *** [multicool.o] Error 2
ERROR: compilation failed for package ‘multicool’
And here is the full output:
> install.packages('multicool')
Installing package into ‘/pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3’
(as ‘lib’ is unspecified)
trying URL 'https://cloud.r-project.org/src/contrib/multicool_0.1-10.tar.gz'
Content type 'unknown' length 11387 bytes (11 KB)
==================================================
downloaded 11 KB
* installing *source* package ‘multicool’ ...
** package ‘multicool’ successfully unpacked and MD5 sums checked
** libs
icpc -I/opt/bwhpc/common/math/R/3.3.1-mkl-11.2.3-intel-15.0_O2_pragma_noopt/lib64/R/include -DNDEBUG -I/usr/local/include -I"/pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -O2 -std=c++11 -fp-model strict -openmp -xHost -c RcppExports.cpp -o RcppExports.o
icpc -I/opt/bwhpc/common/math/R/3.3.1-mkl-11.2.3-intel-15.0_O2_pragma_noopt/lib64/R/include -DNDEBUG -I/usr/local/include -I"/pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -O2 -std=c++11 -fp-model strict -openmp -xHost -c compositions.cpp -o compositions.o
icpc -I/opt/bwhpc/common/math/R/3.3.1-mkl-11.2.3-intel-15.0_O2_pragma_noopt/lib64/R/include -DNDEBUG -I/usr/local/include -I"/pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include" -fpic -O2 -std=c++11 -fp-model strict -openmp -xHost -c multicool.cpp -o multicool.o
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(69): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
_M_value = __z._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(77): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
_M_value = __z._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(115): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value + __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(115): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value + __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(120): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value - __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(120): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value - __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(125): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value * __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(125): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value * __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(130): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value / __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(130): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value / __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(134): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return -__x._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(141): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value == __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(141): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value == __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(146): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value != __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(146): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value != __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(150): error #308: member "std::complex<float>::_M_value" (declared at line 1187 of "/usr/include/c++/4.8.5/complex") is inaccessible
return ~__z._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(187): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value + __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(187): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value + __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(192): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value - __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(192): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value - __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(197): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value * __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(197): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value * __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(202): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value / __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(202): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value / __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(206): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return -__x._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(211): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value == __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(211): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value == __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(216): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value != __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(216): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return __x._M_value != __y._M_value;
^
In file included from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/RcppCommon.h(64),
from /pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/Rcpp/include/Rcpp.h(27),
from multicool.cpp(8):
/pfs/data1/software_uc1/bwhpc/common/compiler/intel/compxe.2015.3.187/composer_xe_2015.3.187/compiler/include/complex(220): error #308: member "std::complex<double>::_M_value" (declared at line 1337 of "/usr/include/c++/4.8.5/complex") is inaccessible
return ~__z._M_value;
^
compilation aborted for multicool.cpp (code 2)
make: *** [multicool.o] Error 2
ERROR: compilation failed for package ‘multicool’
* removing ‘/pfs/data1/home/kn/kn_kn/kn_pop260093/R/x86_64-pc-linux-gnu-library/3.3/multicool’
The downloaded source packages are in
‘/scratch/RtmpQPqfE3/downloaded_packages’
Warning message:
In install.packages("multicool") :
installation of package ‘multicool’ had non-zero exit status
Is there any way to install the library?
Solution
Adding
CXXFLAGS = -diag-disable 308
to ~/.R/Makevars solved my issue (found here).
Answered By - BayerSe Answer Checked By - Clifford M. (WPSolving Volunteer)